GgaEX6004719 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NQX8]
Coordinates
chr1:117635275-117644091:-
Coord C1 exon
chr1:117644003-117644091
Coord A exon
chr1:117642976-117643542
Coord C2 exon
chr1:117635275-117635424
Length
567 bp
Sequences
Splice sites
3' ss Seq
ATTTTAATTGTATTTTTCAGGAG
3' ss Score
9.46
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
ACACTGTGACTGATGAGAGTTAAAGGCCATGGATGAAGATGGGCTTGAATTGCAGCCACATGAGCCAAATGCATTTTTTGATCCAACAG
Seq A exon
GAGCTGATGCCACACATATGGATGGAGATCAGATTGTTGTGGAAGTACAGGAAACAGTATTTGTTTCAGATGTAGTCGACTCAGATATAACTGTGCATAATTTTGTTCCTGACGATCCAGATTCTGTAGTAATCCAAGATGTCATTGAGGATGTTGTTATTGAGGATGTTCAGTGCCCAGATATTATGGAGGAGCCAGACGTATCTGAAACTGTCATTATTCCTGAACAAGTGCTGGACACAGACGTGGCTGAAGAGGTTTCTTTGGCTCATTGCACTGTCCCAGATGATGTTTTGGCTTCAGACATAACAGCAGAAGCAATGTCTATACCAGAACATGTACTGACGAGCGAGTCAATGCATGTACCTGAAGTTGGACATGTAGAACATGTAGTTCATGATAATGTTGAAGAAGCAGATATTGTCACTGATACTCTGGGAACAGATGTTGTTTCTGAAGAGGTCTTGGTGGCAGACTGCGCATCGGAAGCAGTGATCGATGCCAATGGGATCCCTGTGGAACATCAAGACGAGAAGGGCAACTGTGAAGATTACCTGATGATTTCTC
Seq C2 exon
TGGATGATGCTGGTAAGATAGAACATGAAGGTTCTGCTGAAATTACCATGGAAGCAGAGTCAGAAAGTGGATCTTGTAAAGTGGATGGCATTTGTCCAGAAGTCATCAAGGTCTATATATTCAAAGCAGACCCTGGAGAAGATGATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016327-'0-6,'0-2,2-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.619 A=0.326 C2=0.373
Domain overlap (PFAM):
C1:
NO
A:
PF047048=Zfx_Zfy_act=PU(42.6=73.7)
C2:
PF047048=Zfx_Zfy_act=FE(15.2=100)
Main Skipping Isoform:
ENSGALT00000026338fB4276
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGTGACTGATGAGAGTTAAAGG
R:
TAAATCATCTTCTCCAGGGTCTGC
Band lengths:
238-805
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]