HsaEX0072713 @ hg19
Exon Skipping
Gene
ENSG00000005889 | ZFX
Description
zinc finger protein, X-linked [Source:HGNC Symbol;Acc:12869]
Coordinates
chrX:24193506-24197887:+
Coord C1 exon
chrX:24193506-24193560
Coord A exon
chrX:24195831-24195983
Coord C2 exon
chrX:24197300-24197887
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGATTTCTAAATTTCTATAGCCA
3' ss Score
5.61
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
TTTTTCAGAACACTTCCCATACATTCCCATTTGATCATCACCACAGTCCTGTGAG
Seq A exon
CCATAGATGGAGCATATTGGTGGTATATTGCACCAGAACAAAAAGGGAAGCGTGTGAAGGGAGAAAGGAAAAAAAATAGAAGTAAAAGAAACACATGGGAGAGATGGAAAGAAGAACAAATATGAGTTGAGGAGAGGGAGGTGGAGCAAAAAG
Seq C2 exon
GAGCTGATGGTACACACATGGATGGTGATCAAATTGTTGTGGAAGTACAAGAAACTGTTTTTGTTTCAGATGTTGTGGATTCAGACATAACTGTGCATAACTTTGTTCCTGATGACCCAGATTCAGTTGTAATCCAAGATGTTATTGAGGACGTTGTTATAGAAGATGTTCAGTGCCCAGATATCATGGAAGAAGCAGATGTGTCTGAAACGGTCATCATTCCTGAGCAAGTGCTGGACTCAGATGTAACTGAAGAAGTTTCTTTAGCACATTGCACAGTCCCAGATGATGTTTTAGCTTCTGACATTACTTCAGCCTCAATGTCTATGCCAGAACACGTCTTGACGGGTGATTCTATACATGTGTCTGACGTTGGACATGTTGGACATGTTGGACATGTTGAACATGTGGTTCATGATAGTGTAGTGGAAGCAGAAATTGTCACTGATCCTCTGACTACCGACGTAGTTTCAGAAGAAGTATTGGTAGCAGACTGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005889_MULTIEX1-7/7=6-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.220 C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF090855=Adhes-Ig_like=WD(100=92.3),PF047048=Zfx_Zfy_act=WD(100=57.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCATCACCACAGTCCTGT
R:
TGCTCAGGAATGATGACCGTT
Band lengths:
253-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)