RnoEX6025844 @ rn6
Exon Skipping
Gene
ENSRNOG00000005624 | Zfx
Description
zinc finger protein X-linked [Source:RGD Symbol;Acc:1562664]
Coordinates
chrX:63177769-63195572:-
Coord C1 exon
chrX:63195505-63195572
Coord A exon
chrX:63182296-63182385
Coord C2 exon
chrX:63177769-63178338
Length
90 bp
Sequences
Splice sites
3' ss Seq
ACTGGTGTCTCTTGATTTAGGTG
3' ss Score
9.99
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GTGCGTATAACTGTGCCCAGCTAACCTTGTAAGATGAATTGGGGAGCATTCCCTCTTTTTTGAAACAG
Seq A exon
GTGTTCTGGCTGATGAGAATTTAAAGGCCATGGATGAAGATGGACTTGAATTACAACCACAAGCACCAAACTCATTTTTTGATGCAACAG
Seq C2 exon
GAGCTGGTGCTACACACATGGATGGAAATCAAATTGTTGTGGAAGTACAAGAAACGGTTTATGTGTCAGATGTTGTGGATTCAGACATAACCGTTCATAACTACGTTCCCGATGACCCAGACTCAGTTGTAATCCAAGATGTTATTGAGGATGTTGTTATAGAAGATGTCCAATGTACAGATATCATGGACGAAGCAGATGTGTCCGAAACAGTCATCATCCCTGAACAAGTCCTGGATTCAGATGTAACCGAAGAAGTTTCTTTAACGCATTGCACAGTTCCAGATGATGTTTTAGCTTCCGATATTACTTCAGCCTCAATATCTATGCCTGAACATGTCTTGACAAGTGAATCTATACATGTGTCTGACGTTAGTCACGTTGAACATGTGGTTCATGATAGTGTAGTAGAAGCAGAAATCGTCACAGATCCTCTGACCGCTGATGTTGTTTCGGAAGAAGTGCTGGTAGCAGACTGTGCCTCTGAAGCAGTCATAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005624-'6-5,'6-4,7-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.964 C2=0.139
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF047048=Zfx_Zfy_act=PU(98.6=73.8),PF047048=Zfx_Zfy_act=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCCAGCTAACCTTGTA
R:
TGAGTCTGGGTCATCGGGAAC
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]