HsaALTA1002309-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4 member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr3:27418486-27420787:-
Coord C1 exon
chr3:27420700-27420787
Coord A exon
chr3:27418563-27418632
Coord C2 exon
chr3:27418486-27418562
Length
70 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATC
5' ss Score
7.05
3' ss Seq
TCAATATTTTTTTCACTTAGATT
3' ss Score
7.77
Exon sequences
Seq C1 exon
GTTTTTGTTTTTGTTATTGGGTCCAGCGGGCAAGGCACCACAGTACCATGAAATTGGACGATCAATAGCCACTCTCATGACAGATGAG
Seq A exon
ATTTTCCATGATGTAGCTTATAAAGCAAAAGACAGAAATGACCTCTTATCTGGAATTGATGAATTTTTAG
Seq C2 exon
ATCAAGTAACTGTCCTACCTCCAGGAGAGTGGGATCCTTCTATACGCATAGAACCACCAAAAAGTGTCCCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867-39-31,39-30-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=NA C2=0.163
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(36.2=100)
A:
NA
C2:
PF075658=Band_3_cyto=PD(45.0=73.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTTTGTTATTGGGTCCAGCG
R:
TGAGAAGGGACACTTTTTGGTGG
Band lengths:
159-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains