MmuALTA0016753-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:15582949-15589945:+
Coord C1 exon
chr14:15582949-15583036
Coord A exon
chr14:15589799-15589892
Coord C2 exon
chr14:15589893-15589945
Length
94 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
CAGTTTCTTCTTTTTTATAGATT
3' ss Score
8.01
Exon sequences
Seq C1 exon
GTTTTTGTTTCTGTTACTGGGCCCAGCAGGGAAAGCCCCACAGTACCATGAAATTGGCAGATCCATAGCAACTCTCATGACAGATGAG
Seq A exon
ATTTTTCATGATGTGGCTTATAAAGCAAAAGATCGTAATGACCTCCTATCTGGAATTGATGAATTCTTAGATCAAGTAACTGTTCTTCCTCCAG
Seq C2 exon
GAGAGTGGGATCCTTCCATACGCATAGAGCCTCCAAAAAGTGTTCCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733-16-16,16-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.163
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.8=100)
A:
NA
C2:
PF075658=Band_3_cyto=PD(13.4=73.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTTCTGTTACTGGGCCCA
R:
GAGAAGGAACACTTTTTGGAGGC
Band lengths:
135-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: