MmuALTA0016753-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:15582949-15589945:+
Coord C1 exon
chr14:15582949-15583036
Coord A exon
NA
Coord C2 exon
chr14:15589893-15589945
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
AGTAACTGTTCTTCCTCCAGGAG
3' ss Score
9.18
Exon sequences
Seq C1 exon
GTTTTTGTTTCTGTTACTGGGCCCAGCAGGGAAAGCCCCACAGTACCATGAAATTGGCAGATCCATAGCAACTCTCATGACAGATGAG
Seq A exon
NA
Seq C2 exon
GAGAGTGGGATCCTTCCATACGCATAGAGCCTCCAAAAAGTGTTCCTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733-16-16,16-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.163
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.8=100)
A:
NA
C2:
PF075658=Band_3_cyto=PD(13.4=73.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTTCTGTTACTGGGCCCA
R:
GAGAAGGAACACTTTTTGGAGGC
Band lengths:
135-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: