HsaALTA1002555-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000038945 | MSR1
Description
macrophage scavenger receptor 1 [Source:HGNC Symbol;Acc:HGNC:7376]
Coordinates
chr8:16373362-16383327:-
Coord C1 exon
chr8:16383279-16383327
Coord A exon
chr8:16373443-16373743
Coord C2 exon
chr8:16373362-16373442
Length
301 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
ACAAACCTTGTTTTTCACAGGTT
3' ss Score
8.64
Exon sequences
Seq C1 exon
ATTGCCTGTTTTACTTCTCACCATTGATTTATGTTGCCAAAACAAAGAG
Seq A exon
GTTTTCTCCAAATTCTCCAAATTATTATCTGATATTGAACTGATTTTATTAAGAAGAGTGAAGTGATAGTTCAACTCTACTCAGACAGAAGACATGTACTTCCAAGAAGACGGAGTTTGCAAAGATCACATTAGCACATATTCTGTCCATAGATTTTCTACTGTGATTTAGTTGGATAAGCTTATGCTACACATTAGTGTAATAAGACTAAAATTATTGATTTGTATGAAATGTAAATTAAGTTTTAAATCTTTATCATTGGAAATGGGTGGTTTATATTTTTGTTTTTTTCTTAGTTCAG
Seq C2 exon
GACCACTTGAATCCCCCCAGGAATCCACTGCAATTGTTATATTCCATTGTCAGTGAGTGAGAAAGAAAAGAAGGAGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000038945-27-24,27-23,27-22-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains