HsaEX1024383 @ hg38
Exon Skipping
Gene
ENSG00000038945 | MSR1
Description
macrophage scavenger receptor 1 [Source:HGNC Symbol;Acc:HGNC:7376]
Coordinates
chr8:16373265-16383327:-
Coord C1 exon
chr8:16383279-16383327
Coord A exon
chr8:16375553-16375652
Coord C2 exon
chr8:16373265-16373743
Length
100 bp
Sequences
Splice sites
3' ss Seq
ACTCTGTGTCTCATGCTCAGCAC
3' ss Score
6.07
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATTGCCTGTTTTACTTCTCACCATTGATTTATGTTGCCAAAACAAAGAG
Seq A exon
CACTGCACTTGGAACAGAAGACCCCCAAGACCCATGCCTGAATCATCTGTGTTCTCCATAGCCTCTGCCAAGCCAGGTCTGAACTAGGACAAGGGCTCAG
Seq C2 exon
GTTTTCTCCAAATTCTCCAAATTATTATCTGATATTGAACTGATTTTATTAAGAAGAGTGAAGTGATAGTTCAACTCTACTCAGACAGAAGACATGTACTTCCAAGAAGACGGAGTTTGCAAAGATCACATTAGCACATATTCTGTCCATAGATTTTCTACTGTGATTTAGTTGGATAAGCTTATGCTACACATTAGTGTAATAAGACTAAAATTATTGATTTGTATGAAATGTAAATTAAGTTTTAAATCTTTATCATTGGAAATGGGTGGTTTATATTTTTGTTTTTTTCTTAGTTCAGGACCACTTGAATCCCCCCAGGAATCCACTGCAATTGTTATATTCCATTGTCAGTGAGTGAGAAAGAAAAGAAGGAGGATGGGTAAGAAAGGGCTTGGAGAGTCTGGGAGCCTATGTGAGTCTGTGTGCAAAGCATATTAACTCTGACTCTGCCCAAAGCTTACAGAGAAGATATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000038945-'27-22,'27-21,28-22
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGTTTTACTTCTCACCA
R:
CACTAATGTGTAGCATAAGCTTATCC
Band lengths:
246-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains