HsaALTA1003133-4/4 @ hg38
Alternative 3'ss
Gene
ENSG00000049323 | LTBP1
Description
latent transforming growth factor beta binding protein 1 [Source:HGNC Symbol;Acc:HGNC:6714]
Coordinates
chr2:33361429-33363421:+
Coord C1 exon
chr2:33361429-33361515
Coord A exon
chr2:33362959-33363395
Coord C2 exon
chr2:33363396-33363421
Length
437 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
3' ss Seq
TGCTTTCTTTTATCCTCAAGAAA
3' ss Score
5.32
Exon sequences
Seq C1 exon
CTGAGTTCACTGAAATGTGTCCCAAAGGGAAAGGTTTTGTGCCTGCTGGAGAATCATCTTCTGAAGCTGGTGGTGAGAACTATAAAG
Seq A exon
AAAGACTTGCATTCAAGTTCCACCAAACTTTATTGGAAACTTTCTACATCTCAACTAGTGAATGGGCCAGAATATACATTACAGAACACATTTCTTAAAAGGTATATATCCTTTTGTTGATGCCACTATGGAACCATAGACCATTTCATCAAATATGAGGTAGCATCTCAGAAACCATATTTACAAATACACTTCTCCTATAATGTTTTGGGCATTGCTTCTCAAATATCACAGACAAACTACATCTGTTTATGTTTTTATGCCTGCCAATTAGGCCTTATTTTAAGAAGGTTATATTGCTGTTTGTGTAGGATTCTTTGGAATGTAAATATTATAATATCTAACTTAAAGCCCCAAATCTGGTTAGACTCTTTTTAATTGAAAGATCAAACCTAACTCCTTTTTGTATTTCTCAATTTTTTTCCCCGTAGATGCAG
Seq C2 exon
ATGAATGCCTACTTTTTGGACAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000049323-76-86,76-85,76-84,76-83-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0068312=TB=PD(11.4=16.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.5),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains