HsaALTA1005688-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000072864 | NDE1
Description
nudE neurodevelopment protein 1 [Source:HGNC Symbol;Acc:HGNC:17619]
Coordinates
chr16:15667286-15677944:+
Coord C1 exon
chr16:15667286-15667439
Coord A exon
NA
Coord C2 exon
chr16:15677804-15677944
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCTGTGTTGTCCTTCAGGAGAAG
3' ss Score
-8.4
Exon sequences
Seq C1 exon
GGCAGAAAATACGCAAGAGGAACTCCGAGAATTCCAGGAGGGAAGCCGAGAATATGAAGCTGAATTGGAGACGCAGCTGCAACAAATTGAAACCAGGAACAGAGACCTCCTGTCCGAAAATAACCGCCTTCGCATGGAGCTGGAAACCATCAAG
Seq A exon
NA
Seq C2 exon
AAGTTTGAAGTGCAGCACTCTGAAGGCTACCGGCAGATCTCAGCCTTGGAGGATGACCTCGCGCAGACCAAAGCCATTAAAGACCAATTGCAGAAATACATCAGAGAGCTGGAGCAAGCAAATGACGACCTGGAAAGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000072864-12-41,12-40-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=NA C2=0.237
Domain overlap (PFAM):
C1:
PF079267=TPR_MLP1_2=FE(66.2=100),PF104734=CENP-F_leu_zip=FE(56.0=100),PF040127=PspA_IM30=FE(60.7=100),PF088265=DMPK_coil=FE(91.1=100)
A:
NA
C2:
PF040127=PspA_IM30=PD(18.4=29.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATAACCGCCTTCGCATGGAG
R:
GGTCATCCTCCAAGGCTGAGA
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains