HsaALTA1006244-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000076067 | RBMS2
Description
RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909]
Coordinates
chr12:56571698-56580375:+
Coord C1 exon
chr12:56571698-56571855
Coord A exon
chr12:56580258-56580327
Coord C2 exon
chr12:56580328-56580375
Length
70 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTTTTTTTTTTTTAACACAGATT
3' ss Score
8.06
Exon sequences
Seq C1 exon
CAACAGGAACAGGACCCCACAAATTTATACATCTCAAACCTCCCACTGTCAATGGATGAGCAGGAACTGGAGGGGATGCTGAAGCCCTTTGGCCAGGTTATCTCCACCCGTATCCTTCGAGATACCAGTGGGACCAGCAGAGGTGTTGGCTTTGCAAG
Seq A exon
ATTCTCGCCCTGTTGCCCAGGCTGGAGTGCAATGGCGTGATCTCGACTCACTACAACCTCTGCCTCCCAG
Seq C2 exon
GTTCAAGCGATTCTCTCACCTCTGCCTCCTGAGTAGCTGGGACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076067-29-102,29-101,29-100-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(65.7=83.0)
A:
NA
C2:
PF139001=GVQW=FE(76.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAACAGGACCCCACAAA
R:
GCAGAGGTGAGAGAATCGCTT
Band lengths:
181-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains