HsaEX1030890 @ hg38
Exon Skipping
Gene
ENSG00000076067 | RBMS2
Description
RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909]
Coordinates
chr12:56571698-56581508:+
Coord C1 exon
chr12:56571698-56571855
Coord A exon
chr12:56580278-56580375
Coord C2 exon
chr12:56581399-56581508
Length
98 bp
Sequences
Splice sites
3' ss Seq
ATTCTCGCCCTGTTGCCCAGGCT
3' ss Score
4
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
CAACAGGAACAGGACCCCACAAATTTATACATCTCAAACCTCCCACTGTCAATGGATGAGCAGGAACTGGAGGGGATGCTGAAGCCCTTTGGCCAGGTTATCTCCACCCGTATCCTTCGAGATACCAGTGGGACCAGCAGAGGTGTTGGCTTTGCAAG
Seq A exon
GCTGGAGTGCAATGGCGTGATCTCGACTCACTACAACCTCTGCCTCCCAGGTTCAAGCGATTCTCTCACCTCTGCCTCCTGAGTAGCTGGGACTACAG
Seq C2 exon
CCCCATCCGATCCCTTGCTTTGCAAATTTGCTGATGGCGGGCCAAAGAAACGACAGAACCAAGGAAAATTTGTGCAAAATGGACGGGCTTGGCCAAGGAATGCAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076067_MULTIEX2-2/8=1-4
Average complexity
C3
Mappability confidence:
96%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.415 A=0.000 C2=0.615
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(65.7=83.0)
A:
PF139001=GVQW=FE(76.2=100)
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGTTATCTCCACCCGTA
R:
TGTCTGCATTCCTTGGCCAAG
Band lengths:
175-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains