HsaALTA1006254-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56613018-56614138:-
Coord C1 exon
chr12:56613953-56614138
Coord A exon
chr12:56613228-56613233
Coord C2 exon
chr12:56613018-56613227
Length
6 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTTTCTACCCTTGTAAACAGAGC
3' ss Score
7.16
Exon sequences
Seq C1 exon
AACTGAAGATGTGTGGCTACAATGGCTCTGTCCCTTCTGTGGAATCGTTACACCAAGAGGTCTCAGTCCTGGTCCCTGACCCCACAGTGAGCTGTTTAGATGATCCTTCACATCTTCCTGATCAACTGGAAGACACTCCAATCCTCAGTGAAGACTCTCTGGAGCCCTTCAACTCTCTGGCACCAG
Seq A exon
AGCCAG
Seq C2 exon
TGAGTGGAGGACTATATGGTATTGATGACACGGAGCTGATGGGTGCAGAGGACAAGCTGCCTCTTGAGGACAGCCCTGTGATTTCTGCCCTTGATTGCCCTTCCCTCAATAATGCTACTGCCTTCAGTCTCCTGGCAGATGATAGTCAAACATCAACCTCTATCTTTGCCAGTCCCACCTCTCCACCTGTCCTAGGGGAGTCTGTCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-30-31,30-30-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=0.743
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGACTCTCTGGAGCCCT
R:
CAAGAGGCAGCTTGTCCTCTG
Band lengths:
105-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains