MmuALTA0002663-5/6 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:128112582-128113681:+
Coord C1 exon
chr10:128112582-128112767
Coord A exon
chr10:128113463-128113606
Coord C2 exon
chr10:128113607-128113681
Length
144 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TCTTTCACCCCCATAAGCAGAGC
3' ss Score
3.44
Exon sequences
Seq C1 exon
AACTAAAGATGTGTGGCTACAATGGTTCTGTCTCCTCTGTGGAGTCTTTACACCAAGAAGTCTCCGTCCTGGTCCCTGATCCCACAGTGAGCTGTCTAGATGATCCTTCACATCTTCCTGATCAACTGGAAGACACTCCAATTCTCAGTGAAGACTCCCTGGAGCCCTTTGACTCTCTGGCAGCAG
Seq A exon
AGCCAGTGAGTGGCAGTCTTTATGGTATAGATGATGCGGAGCTGATGGGTGCAGAAGACAAGTTGCCTCTGGAGGGCAACCCTGTGATCTCTGCCCTCGATTGCCCTGCTCTCAGTAATGCTAATGCCTTCAGTCTCCTGGCAG
Seq C2 exon
ACGACAGCCAGACATCAGCCTCCATCTTTGTCAGCCCTACCTCCCCACCTGTCTTAGGGGAGTCTGTCTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-16-25,16-24,16-23,16-22,16-21,16-20-5/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.683 A=NA C2=0.448
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGCTACAATGGTTCTGT
R:
AGACTCCCCTAAGACAGGTGG
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types