MmuALTA0002663-6/6 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:128112582-128113681:+
Coord C1 exon
chr10:128112582-128112767
Coord A exon
chr10:128113460-128113606
Coord C2 exon
chr10:128113607-128113681
Length
147 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
TTTTCTTTCACCCCCATAAGCAG
3' ss Score
1.06
Exon sequences
Seq C1 exon
AACTAAAGATGTGTGGCTACAATGGTTCTGTCTCCTCTGTGGAGTCTTTACACCAAGAAGTCTCCGTCCTGGTCCCTGATCCCACAGTGAGCTGTCTAGATGATCCTTCACATCTTCCTGATCAACTGGAAGACACTCCAATTCTCAGTGAAGACTCCCTGGAGCCCTTTGACTCTCTGGCAGCAG
Seq A exon
CAGAGCCAGTGAGTGGCAGTCTTTATGGTATAGATGATGCGGAGCTGATGGGTGCAGAAGACAAGTTGCCTCTGGAGGGCAACCCTGTGATCTCTGCCCTCGATTGCCCTGCTCTCAGTAATGCTAATGCCTTCAGTCTCCTGGCAG
Seq C2 exon
ACGACAGCCAGACATCAGCCTCCATCTTTGTCAGCCCTACCTCCCCACCTGTCTTAGGGGAGTCTGTCTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-16-25,16-24,16-23,16-22,16-21,16-20-6/6
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.683 A=NA C2=0.448
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGGCTACAATGGTTCTGT
R:
AGACTCCCCTAAGACAGGTGG
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types