HsaALTA1006417-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000076944 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:HGNC:11445]
Coordinates
chr19:7645197-7646344:+
Coord C1 exon
chr19:7645197-7645306
Coord A exon
NA
Coord C2 exon
chr19:7646249-7646344
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTACGC
5' ss Score
6.3
3' ss Seq
CCTCCCTGCCCTGCCTGTAGGGC
3' ss Score
10.3
Exon sequences
Seq C1 exon
GTGTGAGTGAGGAGAACCTGGCCAAGCTGATCCAGCATGCCAATGTACAGGCGCACAGCAGCCTCATCCGTAACCTGGAGCAGCTGGGAGGCACTGTCACCAACCCCGGG
Seq A exon
NA
Seq C2 exon
GGCTCGGGGACCTCCAGCCGGCTGGAGCCGAGAGAACGCATGGAGCCCACCTATCAGCTGTCCCGCTGGACCCCGGTCATCAAGGATGTAATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076944-30-46,30-45-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=NA C2=0.470
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(32.2=100)
A:
NA
C2:
PF0099518=Sec1=FE(15.0=100)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCATGCCAATGTACAGG
R:
TACATCCTTGATGACCGGGGT
Band lengths:
170-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains