RnoALTA0039193-1/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000994 | Stxbp2
Description
syntaxin binding protein 2 [Source:RGD Symbol;Acc:619967]
Coordinates
chr12:2188088-2189387:+
Coord C1 exon
chr12:2188088-2188197
Coord A exon
NA
Coord C2 exon
chr12:2189292-2189387
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTACGT
5' ss Score
10.27
3' ss Seq
CCCCCCAACCCCTTCTGTAGGGC
3' ss Score
7.54
Exon sequences
Seq C1 exon
GTGTGAGTGAGGAAAATCTGGCCAAGCTGATCCAGCATGCTAATGTGCAGTCCTACAGCAACCTCATCCGGAACCTGGAGCAGCTGGGGGGCACTGTCACCAACTCTGCG
Seq A exon
NA
Seq C2 exon
GGCTCAGGGACCTCTAGCCGGCTGGAGCGGAGAGAACGCATGGAGCCCACCTACCAGCTGTCTCGCTGGTCCCCAGTCATCAAGGACGTGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000994-18-21,18-20,18-19-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(6.5=100)
A:
NA
C2:
PF0099518=Sec1=FE(5.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGCATGCTAATGTGCAGT
R:
CACGTCCTTGATGACTGGGGA
Band lengths:
170-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]