HsaALTA1008803-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000090661 | CERS4
Description
ceramide synthase 4 [Source:HGNC Symbol;Acc:HGNC:23747]
Coordinates
chr19:8210706-8251171:+
Coord C1 exon
chr19:8210706-8210862
Coord A exon
chr19:8251076-8251109
Coord C2 exon
chr19:8251110-8251171
Length
34 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
ACTGGAACCTGTGTCCACAGAAT
3' ss Score
6.43
Exon sequences
Seq C1 exon
GAGCAGCTGCTGTGAATAAACACAGAAGTGGAGCTGGGGGACTGATTAGAAGCCTCATTCAGTGCACCTGGGCCCCAGCAGGCCCAGCCAGGCGTGGAGGAAGAGGCATTGAGGACTTTCCTTACCTGTTTTTCCAGCTCACCCACTGCCAGCAGAG
Seq A exon
AATGCTGTCCAGTTTCAACGAGTGGTTTTGGCAG
Seq C2 exon
GACAGGTTCTGGTTACCACCCAATGTCACGTGGACAGAGCTAGAAGACCGGGATGGCCGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090661-7-39,7-38,7-37-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.015
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGAGGAAGAGGCATTGAG
R:
CCGGTCTTCTAGCTCTGTCCA
Band lengths:
116-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains