HsaEX0035434 @ hg38
Exon Skipping
Gene
ENSG00000090661 | CERS4
Description
ceramide synthase 4 [Source:HGNC Symbol;Acc:HGNC:23747]
Coordinates
chr19:8210706-8254616:+
Coord C1 exon
chr19:8210706-8210862
Coord A exon
chr19:8251076-8251249
Coord C2 exon
chr19:8254499-8254616
Length
174 bp
Sequences
Splice sites
3' ss Seq
ACTGGAACCTGTGTCCACAGAAT
3' ss Score
6.43
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GAGCAGCTGCTGTGAATAAACACAGAAGTGGAGCTGGGGGACTGATTAGAAGCCTCATTCAGTGCACCTGGGCCCCAGCAGGCCCAGCCAGGCGTGGAGGAAGAGGCATTGAGGACTTTCCTTACCTGTTTTTCCAGCTCACCCACTGCCAGCAGAG
Seq A exon
AATGCTGTCCAGTTTCAACGAGTGGTTTTGGCAGGACAGGTTCTGGTTACCACCCAATGTCACGTGGACAGAGCTAGAAGACCGGGATGGCCGTGTCTACCCCCACCCCCAGGACTTGTTGGCAGCCCTGCCCCTGGCGCTGGTCCTCCTGGCCATGCGCCTTGCCTTTGAGAG
Seq C2 exon
ATTCATTGGCCTGCCCCTGAGCCGGTGGCTGGGTGTGAGGGATCAGACCAGGAGGCAAGTGAAGCCCAACGCCACGCTGGAGAAACACTTCCTCACGGAAGGGCACAGGCCCAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090661_MULTIEX1-5/5=C1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.016 C2=0.045
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=PU(44.6=62.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGCTGTGAATAAACACA
R:
AGGAAGTGTTTCTCCAGCGTG
Band lengths:
248-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development