RnoEX0020317 @ rn6
Exon Skipping
Gene
ENSRNOG00000001072 | Cers4
Description
ceramide synthase 4 [Source:RGD Symbol;Acc:1309303]
Coordinates
chr12:4448685-4474300:-
Coord C1 exon
chr12:4474161-4474300
Coord A exon
chr12:4449964-4450137
Coord C2 exon
chr12:4448685-4448802
Length
174 bp
Sequences
Splice sites
3' ss Seq
ACCTGATTGTGTGTCCACAGCAT
3' ss Score
8.79
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TCCCATTTCCTCTCTCGCGGGTGGAGGCTTAGTAGAGAGGAGTTTCTCGGCCCAACGCGGTCTGTGGCGTGTCTACGGTGTCTTCGGGTTAGCTGGTCCCCGCACCGCGTCGGCCTGCATCCTGCTGTCTGCACCCCCAG
Seq A exon
CATGCTGTTCAGCTTGAATGAGTGGCTGTGGCAGGAGACATACTGGTTACCACCCAATGTCACATGGGCACAGCTGGAGGACCGTGATGGCCTGGTGTTCGCCCACCCTCACCACGTGCTTGCTGCCTTGCCAATTGCACTGGTCCTGGTGGCTATGCGTATCATCTTTGAGAG
Seq C2 exon
ATTCGTGGCCTTGCCCCTGAGCCGGTGGATGGGTGTGCAGGATCCAATCAGGAGAAAGATAAAGCCCAACCCAGTGCTGGAGAAATACTTCCTCAGGATGAAGCAGAGACCAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001072_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0210110=Ocular_alb=PU(66.1=67.2)
C2:
PF0210110=Ocular_alb=PD(32.2=47.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTCCTCTCTCGCGGGTG
R:
CCACTGGTCTCTGCTTCATCC
Band lengths:
253-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]