BtaEX0008659 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003434 | CERS4
Description
Bos taurus ceramide synthase 4 (CERS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001015520]
Coordinates
chr7:18128319-18158128:+
Coord C1 exon
chr7:18128319-18128446
Coord A exon
chr7:18154985-18155158
Coord C2 exon
chr7:18158011-18158128
Length
174 bp
Sequences
Splice sites
3' ss Seq
ACTGGACCCTGTGTCCACAGGAT
3' ss Score
8.79
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
CCTGGAGCAGAGTCCGGGTGCCTGGTGCCGGCTGCGCGCGTCTCCTCCTCCGTATCTGCGCCAGGCTAGCTGTCCGCCACCCACCCTACCGCCGGCCCCTGGTGCTCCGGGCCGCCTGCGCCCCCCAG
Seq A exon
GATGTGGTCCAGCCTGAACGACTGGCTGTGGAACGAGAGGTTGTGGCTCCCCGCCAACATCTCATGGGCTCAACTGGAGGACCACGATGGCCTGGTCTTCCCCCACCCCCAGGACACATTGATGGCTGTGCCCCTGGCGCTGGCCCTGGTGGTCGTTCGCTTCACCTTCGAGAG
Seq C2 exon
ATTCGTCGCCCTGCCCCTGAGCCGGTGGCTGGGCGTGCGGAACCAGATCAGGAGGCCAGCGGACCCCAATGCCACGCTGGAGAAGCATTACCTAATGAAAGGGCGGGAGCCCACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003434_MULTIEX1-2/10=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=PU(38.0=47.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGCAGAGTCCGGGTG
R:
GCTCCCGCCCTTTCATTAGG
Band lengths:
236-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development