GgaEX1000062 @ galGal3
Exon Skipping
Gene
ENSGALG00000000307 | E1C668_CHICK
Description
NA
Coordinates
chr28:87678-117001:-
Coord C1 exon
chr28:116947-117001
Coord A exon
chr28:99315-99488
Coord C2 exon
chr28:87678-87795
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTCCTTTCCTTCCAGGAT
3' ss Score
11.74
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATTCTTCTTCCAGAGGTCAATAAGGACTTGATGACATGAATATGGAAATTTCCAG
Seq A exon
GATGGCACACTCTTTGAATGAATGGCTATGGCAGCACGAGTTCTGGCTCCCCCCAGGAATTACATGGGAGGACATGAAGGAGTCTGAAGACACCCATTATCCAAAGCCTCGTGATCTCCTGCTCAGCATCCCTTTTGCCTTAATCCTGGTTGTCATTCGATGCATCTTTGAAAG
Seq C2 exon
AGCCATAGCCCTGCCTCTCAGTGCCAAACTGGGTGTGAAGGACAAGCTGAGACCTAAAGCTCAGCCCATCTCCATTCTGGAAACATTCTACACTGTGAATTGTAAGAACCCTAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000307-'4-4,'4-2,6-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=PU(45.6=65.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTTCCAGAGGTCAATAAGGACT
R:
TCTTTAGGGTTCTTACAATTCACAGT
Band lengths:
170-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]