DreEX0021069 @ danRer10
Exon Skipping
Gene
ENSDARG00000031387 | cers4a
Description
ceramide synthase 4a [Source:ZFIN;Acc:ZDB-GENE-020808-1]
Coordinates
chr22:4323288-4332394:+
Coord C1 exon
chr22:4323288-4323572
Coord A exon
chr22:4327428-4327607
Coord C2 exon
chr22:4332274-4332394
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTCCAGTTCTCTCTCTTCAGATT
3' ss Score
9.55
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATTTAAGGACAGTTTTATCCGCCGAAGCCTCCGTTTTTTCCCGCTGAAGCCTCTTGAAGACTGCGGTCTGTGTGCTGGATGTGAGTTGATGTCGACGTCAGGATTCCTGCGATTATTTGCCGGAAGATTCTGCGCGAGGGTTTGTTTTTGTTTGAAGCTCACGATGAAGGATAACGTTTATAACGAAAAACGGACATAAAACACGGAAAGACGAGCGCTGAAGAGGCCTGTGGTTTATTTTAATCGGATATTAAGCTTGTCCTCTCATCATTGGAGCATGGACAG
Seq A exon
ATTGGAGGATAACATAAACCGTTGGTTATGGCGGGAAGACTTCTGGCTTCCTCCTGGCGTTACGTGGAAAGACATCGCAGAGGGAACGTCTGACGGAAGTCGGCATCCCGTACCGCGGGATCTGCTCATCTCATTCCCATTGGCCCTGGGGTTCATCGCCCTGCGTTTTGTATTCGAAAG
Seq C2 exon
GGTGGTGGCTCTGCCTCTGAGCCGCCGGCTGGGTGTTCGTGACAGGGTTCGGCTTCACATCACACCGATCCCCAAACTGGAGGCGTTCTACCTGCAGAAGAAGAAGACTGAGCCGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031387_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0004624=Homeobox=PU(47.5=68.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCGAGGGTTTGTTTTTGTT
R:
GTAGAACGCCTCCAGTTTGGG
Band lengths:
245-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]