MmuEX0026159 @ mm9
Exon Skipping
Gene
ENSMUSG00000008206 | Lass4
Description
LAG1 homolog, ceramide synthase 4 [Source:MGI Symbol;Acc:MGI:1914510]
Coordinates
chr8:4493405-4516990:+
Coord C1 exon
chr8:4493405-4493590
Coord A exon
chr8:4515555-4515728
Coord C2 exon
chr8:4516873-4516990
Length
174 bp
Sequences
Splice sites
3' ss Seq
ACCTGATTGTGTATCCACAGCAT
3' ss Score
7.43
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACCACGCCCAAGGCCCCATCAAACTCCTCCCGGAGGCCCCCTCCGGTCCTATTTCCTCCCTCGCGGGTGGAGGCTCTGTAGCGAGGAGTTTCTCGGCCCAGAGCGGTCTGCGGCTTGTCTAAGGCATCTTCGGATTAGCTGATCTCCGCACCGCCTCGGCCTGCATCTTGCTTTCTGAACCTCCAG
Seq A exon
CATGTCGTTCAGCTTGAGTGAGTGGCTGTGGCAGGAGACATACTGGTTACCACCCAATGTCACATGGGCAGAGCTGGAGGACCGTGATGGCCTGGTGTTCGCCCACCCTCACCACGTGCTTGCTGCCTTCCCAGTGGCTCTGGTCCTGGTGGCTGTGCGAATTGTCTTTGAGAG
Seq C2 exon
ATTTGTGGCCTTGCCCCTGAGCCGGTGGATGGGTGTGCAGGATCCAATCAGGAGAAAGATAAAGCCCAACCCGGTGCTGGAGAAGTACTTCCTCAGGATGAAGCAGTGTCCAGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008206-'0-4,'0-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=PU(35.4=42.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCCCCATCAAACTCCTC
R:
CACCGGGTTGGGCTTTATCTT
Band lengths:
254-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: