DreEX6029562 @ danRer10
Exon Skipping
Gene
ENSDARG00000018619 | cers4b
Description
ceramide synthase 4b [Source:ZFIN;Acc:ZDB-GENE-110719-2]
Coordinates
chr2:56256344-56265726:-
Coord C1 exon
chr2:56265309-56265726
Coord A exon
chr2:56261358-56261528
Coord C2 exon
chr2:56256344-56256461
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGCTGTGTGTTTGTGCTCAGGAT
3' ss Score
9.73
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
CATGAGTGTGTGTGTATGTGTGTGTGAATGTGTGTATGAAGAACAGACGAGCACACCTTCATCCCAGACTAACATCAGGGATAATTCAGCGCAAAATAATTCCGGGATTCACAACGAAACGAGAAAACGGTGTATTTATTATTGGATGTTTTATTTTTTTATTGATTCAATGCGACGCTACCAAGGACAGGTCGAACCGAATGGCGTTTACAGAATGTTTTAGCATTTTTCAGTGTCGTATTTGTTTGCTGTGAGTGTATTATGAACGCTATTATGGATGCAAATCTCCATGGAAATTAATTTGCGTAAAATCCGCTGATCAGAACTGCGCACATCATCACACGCACACACACATACAAACACACGCACACACACATACAGCATCATCGTCGTCATCAGAGACGCAGGACATCAGCAG
Seq A exon
GATGGATGCGCTCAGCCGGTGGTTCTGGAAGCAGGAGATCTGGCTTCCCCCAGGAATCGTCTGGGAGGATCTGGAGGAGATGCAGGGCTCTCGGCGTCCAATGCCCAGAGATCTGCTCCTCGCTCTGCCTCTCGCTCTGGCCTTCATCATGCTGCGCTACGCTTTTGAGAG
Seq C2 exon
GCGTGTGGCGTTTCCTCTCAGCCGAGTTTTAGGAGTCAAAGATCCAGTTCGCCTGAAAGTCACTCCATCTCCCAGTCTGGAGGCGTTTTACACTAAAAACAGCAGGCAGCCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018619-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=PU(38.0=47.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGAACCGAATGGCGTTTA
R:
AAACTCGGCTGAGAGGAAACG
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]