GgaEX1000062 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C668]
Coordinates
chr28:118801-148124:-
Coord C1 exon
chr28:148070-148124
Coord A exon
chr28:130438-130611
Coord C2 exon
chr28:118801-118918
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTGGTCTCCTTTCCTTCCAGGAT
3' ss Score
11.74
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
ATTCTTCTTCCAGAGGTCAATAAGGACTTGATGACATGAATATGGAAATTTCCAG
Seq A exon
GATGGCACACTCTTTGAATGAATGGCTATGGCAGCACGAGTTCTGGCTCCCCCCAGGAATTACATGGGAGGACATGAAGGAGTCTGAAGACACCCATTATCCAAAGCCTCGTGATCTCCTGCTCAGCATCCCTTTTGCCTTAATCCTGGTTGTCATTCGATGCATCTTTGAAAG
Seq C2 exon
AGCCATAGCCCTGCCTCTCAGTGCCAAACTGGGTGTGAAGGACAAGCTGAGACCTAAAGCTCAGCCCATCTCCATTCTGGAAACATTCTACACTGTGAATTGTAAGAACCCTAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000307-'11-13,'11-7,15-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=PU(45.6=65.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTTCCAGAGGTCAATAAGGACT
R:
TCTTTAGGGTTCTTACAATTCACAGT
Band lengths:
170-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]