DreEX0021057 @ danRer10
Exon Skipping
Gene
ENSDARG00000058992 | cers2b
Description
ceramide synthase 2b [Source:ZFIN;Acc:ZDB-GENE-110408-40]
Coordinates
chr16:1338362-1362322:+
Coord C1 exon
chr16:1338362-1338663
Coord A exon
chr16:1360026-1360198
Coord C2 exon
chr16:1362205-1362322
Length
173 bp
Sequences
Splice sites
3' ss Seq
CGAGTGTTGTGTTGCTGCAGATG
3' ss Score
8.11
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
TGAGTTACCGACGCTCGTTCATCACCGGATCCAAGCGGAAGAAATACTCAGACAATCAGGAAATACCATTCAAACTCTCCGCAGCGGCTTCTCTCCCTGTCACACCGATTTTACCGCCTAGAAAACTTTTTGCGATCTTAGGGGAGAGATGAGGGTGGTACACAGCCTGACCGAACCGTAGATCCACTAACGGAGCGTTTAAAACAGCGAAGAACAGCCTCAGGATACCATTATTACCACCATAATCATCAAAATCACCATCACGGTCCGGTTCGCGTTGACCGACTCCACCACACACTGAA
Seq A exon
ATGCTGGCGGGTCTGAGCGAGCTGTTCTGGCAGGAGCGTCTCTGGTTCCCCGAGGGTCTGGGATGGGCTGATCTGGAGGACCGGGACGGACGGGTCTACGCTAAAGCTCGCGACCTGTGGGTGGCGCTGCCCATCGCTGTGCTGTTTCTGCTCATACGACAGCTCTTCGAGAA
Seq C2 exon
ATATGTTGCTACACCGCTGGCCTCTCTGCTGGGCCTGAAGGAAACGGTGAGACGGAGAGTTGCACACAATCCAGCACTGGAGTCCTACTATTGCAACACAAGCAAAAACCCCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058992_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=PU(38.0=47.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACACCGATTTTACCGCCT
R:
CGTCTCACCGTTTCCTTCAGG
Band lengths:
258-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]