BtaEX0008655 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000099 | CERS2
Description
Bos taurus ceramide synthase 2 (CERS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034667]
Coordinates
chr3:19835017-19840497:+
Coord C1 exon
chr3:19835017-19835075
Coord A exon
chr3:19839783-19839956
Coord C2 exon
chr3:19840380-19840497
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCCTTCCTCACTCAGGAT
3' ss Score
10.72
5' ss Seq
GCTGTGAGC
5' ss Score
3.2
Exon sequences
Seq C1 exon
GAGAGACGGAGCAGCGGCTCCCGGCCGGGCCAGCTCCGCGACGCCGCAGCCGCCGCCGA
Seq A exon
GATGCTCCAGACCTTACATGACTACTTCTGGTGGGAACGGCTGTGGCTCCCTGTGAACTTAACCTGGGCTGATCTAGAAGACCGAGATGGACGTGTCTACGCCAAAGCCTCTGACCTCTATATCACACTACCCCTGGCCTTGCTCTTCCTCATCATTCGATACTTCTTTGAGCT
Seq C2 exon
TTACGTGGCTACACCACTGGCTGCCCTCCTGAATGTCAAAGAGAAAACCCGGCTGCGGGCACCTCCAAACCCCACTTTGGAGCATTTCTACATGACCAGTGGCAAGCAGCCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000099_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=PU(45.6=65.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGACGGAGCAGCGGC
R:
TGCTTGCCACTGGTCATGTAG
Band lengths:
167-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development