MmuEX6072539 @ mm9
Exon Skipping
Gene
ENSMUSG00000015714 | Lass2
Description
LAG1 homolog, ceramide synthase 2 [Source:MGI Symbol;Acc:MGI:1924143]
Coordinates
chr3:95119006-95124681:+
Coord C1 exon
chr3:95119006-95119267
Coord A exon
chr3:95123984-95124157
Coord C2 exon
chr3:95124564-95124681
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCTTTCCTCACTCAGGAT
3' ss Score
10.19
5' ss Seq
GCTGTGAGC
5' ss Score
3.2
Exon sequences
Seq C1 exon
GCTCCTCCGCTCCATAGGCGCAGCGCAGGGTTCCGGGCACCGGGCCCCGCCCGGCCGCGGCCCACACCCAACTCAGCTCCGCTACTGGGCTCGGCCTGGGCTCGCCGGGGCTCGGCGGGCAAAGGAGGAAGGAGGGAGGGAGCCGCGGGCAGCGGAAGGGGGAGGAGAGGACCCGGCCCAGTCAGTGCGCACCGGCCGGGCGCTAGAAGTGGGAAACGGAGTAGCGGCGCCCGGGCCGGAGCAGCTCTGCACCGGACGCCGA
Seq A exon
GATGCTCCAGACCTTGTATGACTACTTCTGGTGGGAACGACTATGGCTGCCTGTGAACTTAACCTGGGCTGATCTAGAAGACAAAGATGGACGTGTCTATGCCAAAGCCTCAGATCTCTACATCACACTCCCCCTGGCCCTGCTCTTTCTCGTCATTCGATACTTCTTTGAGCT
Seq C2 exon
TTATGTGGCAACACCCCTGGCTGCCCTCCTGAATGTTAAGGAGAAAACCCGACTGCGGGCACCTCCCAATGCCACCTTGGAACATTTCTACCAGACCAGCGGCAAGCAGCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015714-'1-8,'1-6,6-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF067897=UPF0258=PU(0.1=0.0)
C2:
PF067897=UPF0258=PU(39.8=97.5),PF0004624=Homeobox=PU(46.6=67.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGAGGAAGGAGGGAGGG
R:
GCCGCTGGTCTGGTAGAAATG
Band lengths:
246-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: