RnoEX0020306 @ rn6
Exon Skipping
Gene
ENSRNOG00000021138 | Cers2
Description
ceramide synthase 2 [Source:RGD Symbol;Acc:1310059]
Coordinates
chr2:196487656-196493086:+
Coord C1 exon
chr2:196487656-196487749
Coord A exon
chr2:196492393-196492566
Coord C2 exon
chr2:196492969-196493086
Length
174 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCCTTCCACACTTAGGAT
3' ss Score
10.58
5' ss Seq
GCTGTGAGC
5' ss Score
3.2
Exon sequences
Seq C1 exon
AGGACCCGGCCCAGTCAGTGCGCACTGGCCGGGCGCTAGAAGTGGGACACGGAGCAGCGGCGCCCGGACCGGTCAGCTTTGCACTGGCCGCCGA
Seq A exon
GATGCTCCAGACCTTGTATGACTACTTCTGGTGGGAACGACTATGGCTGCCTGTGAACTTAACCTGGGCTGATCTAGAAGACAAAGATGGACGTGTCTATGCCAAAGCCTCAGACCTCTACATCACACTACCCCTGGCCCTGCTCTTTCTCATCATTCGATACTTCTTTGAGCT
Seq C2 exon
TTATGTGGCTACACCCCTGGCTGCCCTCCTGAATGTTAAGGAGAAAACCCGACTGCGGGCACCTCCCAATGCCACCTTAGAGCATTTCTACCTGACCGTCGGCAAGCAGCCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021138_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004624=Homeobox=PU(45.6=65.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCGGCCCAGTCAGTG
R:
CCGACGGTCAGGTAGAAATGC
Band lengths:
194-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]