HsaALTA1008829-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000090857 | PDPR
Description
pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
Coordinates
chr16:70143510-70144533:+
Coord C1 exon
chr16:70143510-70143658
Coord A exon
chr16:70144421-70144451
Coord C2 exon
chr16:70144452-70144533
Length
31 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTTGGGGTCTCACTTTTCAGTTT
3' ss Score
8.23
Exon sequences
Seq C1 exon
TCCACTGGGGATCAGGCATTAGAAGTTCTACAGTACCTCTTCTCCAATGACCTGGATGTGCCTGTGGGCCACATTGTGCATACTGGCATGCTCAACGAGGGTGGAGGGTATGAAAATGACTGCAGCATAGCACGACTGAACAAGCGCAG
Seq A exon
TTTCTTCATGATCTCTCCAACCGACCAGCAG
Seq C2 exon
GTCCACTGTTGGGCCTGGCTTAAGAAACACATGCCGAAAGACAGCAACCTGCTCCTGGAGGACGTCACCTGGAAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090857-35-42,35-41-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0157116=GCV_T=FE(22.6=100)
A:
NA
C2:
PF0157116=GCV_T=FE(17.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCCACATTGTGCATACTG
R:
GTGTTTCTTAAGCCAGGCCCA
Band lengths:
115-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains