HsaALTA1009610-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000096654 | ZNF184
Description
zinc finger protein 184 [Source:HGNC Symbol;Acc:HGNC:12975]
Coordinates
chr6:27456842-27457409:-
Coord C1 exon
chr6:27457283-27457409
Coord A exon
chr6:27456922-27456950
Coord C2 exon
chr6:27456842-27456921
Length
29 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
GTACTTTCCCCTTACTGCAGGTT
3' ss Score
9.37
Exon sequences
Seq C1 exon
GAAGCGGTGACTTTCAAGGATGTGATAGTGGACTTTACCCAGGAAGAATGGAAACAGCTGGACCCTGGCCAGAGAGATTTGTTCAGGGATGTGACATTGGAAAATTATACACACCTGGTCTCTATAG
Seq A exon
GTTTCTTTCTTTTTTTCCCTAATGAACAG
Seq C2 exon
GACTCCAAGTTTCTAAACCTGATGTGATTTCCCAGTTAGAGCAAGGGACAGAGCCATGGATCATGGAGCCAAGCATTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096654-9-7,9-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.313
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGGCCAGAGAGATTTGT
R:
TGGCTCTGTCCCTTGCTCTAA
Band lengths:
122-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains