MmuALTA0020514-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000006720 | Zfp184
Description
zinc finger protein 184 (Kruppel-like) [Source:MGI Symbol;Acc:MGI:1922244]
Coordinates
chr13:21949660-21950329:+
Coord C1 exon
chr13:21949660-21949786
Coord A exon
chr13:21950203-21950233
Coord C2 exon
chr13:21950234-21950329
Length
31 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
GTACTTTTTCCTTATTGCAGACA
3' ss Score
9.2
Exon sequences
Seq C1 exon
GAATCAGTGACCTTCAAGGATGTGGTCGTGAACTTCACTCAGGAAGAATGGAAACACCTGGATCCTATACAGAGAGATTTGTTCAGAGATGTGACACTGGAAAATTATACACATCTGGTCTCTATAG
Seq A exon
ACAGATTCCTTTTTTTCCTCCCTCTGAGCAG
Seq C2 exon
GGCTCCAGGTTTCCAAACCTGATATGATTTCCCAACTAGAGCAAGGGACAGAGCCATGGACTGAGGATTCGTGCATTCCTGTCGGTCCCTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006720-6-8,6-7,6-6-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.425
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCAGAGATGTGACACTGGA
R:
CACGAATCCTCAGTCCATGGC
Band lengths:
121-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types