HsaALTA1011951-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000103023 | PRSS54
Description
protease, serine 54 [Source:HGNC Symbol;Acc:HGNC:26336]
Coordinates
chr16:58293985-58295039:-
Coord C1 exon
chr16:58294887-58295039
Coord A exon
NA
Coord C2 exon
chr16:58293985-58294209
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGACT
5' ss Score
3.33
3' ss Seq
CTCTACTTTTCTTTCAGCAGCAT
3' ss Score
5.89
Exon sequences
Seq C1 exon
ATTCTTCCCAAGGCAGTAGAAGAAATCCTTCTGTTGAACTCTACTGTGTCAGGCCAGCCTGAGTTCATTTCTCCTTGAGCAGGAACAGTTCATGGACGAACTCTGAGGACCATTCTGAGGACAAGAGGCATCCAGTGTCATGAGTGGAACATG
Seq A exon
NA
Seq C2 exon
CATTTTATGGCTACAGAGTTAAGGCAAGGGTTGAATTCCACGAGTCAAAAAGCAGCCCTTTTCAGAGACCCAACTCTCTGGGGTGCTCAGGGGCTTGGGCTGGATTGAGAAGAAAACTGACAAGAGTAAGCTGCCCTCTCTTCTCTGGCCATCTCACAAACCACAGTGCGGGCCAACTGGTCCTGCCTCTTTACCACACAGAACCAAGCACTAGGGATAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000103023-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAAGAGGCATCCAGTGT
R:
AAGGGCTGCTTTTTGACTCGT
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains