HsaALTA1014312-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000107317 | PTGDS
Description
prostaglandin D2 synthase [Source:HGNC Symbol;Acc:HGNC:9592]
Coordinates
chr9:136976549-136977692:+
Coord C1 exon
chr9:136976549-136976732
Coord A exon
NA
Coord C2 exon
chr9:136977550-136977692
Length
0 bp
Sequences
Splice sites
5' ss Seq
GGGGTAACA
5' ss Score
3.2
3' ss Seq
TCCCACACCACTGGCACCAGGCC
3' ss Score
0.9
Exon sequences
Seq C1 exon
CTCCCCACCCGGGCTCACCTTCAGACCAGCGGCAGCGCTCACCCACCACGCCTGCCAGGGAAGCTCAGTCCCAACAGAATCCAGAGAGGGCCCACCACATGTGCCTGCCTGTGACGGCCTGTGACAGGGCCCCAGCCAGGGCCAACGAGCTGGAGGGGCCCAAGGAGCTGGGTGCAGCGCTGGG
Seq A exon
NA
Seq C2 exon
GCCCCGGACACCCGCTCTGCTGCAGGAGAATGGCTACTCATCACACACTGTGGATGGGACTGGCCCTGCTGGGGGTGCTGGGCGACCTGCAGGCAGCACCGGAGGCCCAGGTCTCCGTGCAGCCCAACTTCCAGCAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107317-9-7,9-6,9-5-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.007
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATGTGCCTGCCTGTGAC
R:
GTAGCCATTCTCCTGCAGCAG
Band lengths:
126-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains