MmuALTA1004256-2/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000015090 | Ptgds
Description
prostaglandin D2 synthase (brain) [Source:MGI Symbol;Acc:MGI:99261]
Coordinates
chr2:25469560-25470046:-
Coord C1 exon
chr2:25470010-25470046
Coord A exon
chr2:25469611-25469701
Coord C2 exon
chr2:25469560-25469610
Length
91 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
GTCCACATTGCTGGCATCAGGCC
3' ss Score
1.68
Exon sequences
Seq C1 exon
CGCCAGAGTACACACCCGGCACCATCCCCACTGTGAG
Seq A exon
GCCCAGGCACCTGCTCTGCTCTGAGCAAATGGCTGCTCTTCGCATGCTGTGGATGGGTTTGGTCCTCCTGGGTCTCTTGGGATTCCCACAG
Seq C2 exon
ACCCCAGCCCAGGGCCATGACACAGTGCAGCCCAACTTTCAACAAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015090-5-6,5-5,5-4,5-2,5-1-2/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.079
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAGAGTACACACCCGG
R:
TTGTCTTGTTGAAAGTTGGGCTG
Band lengths:
87-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types