HsaALTA1015372-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000109625 | CPZ
Description
carboxypeptidase Z [Source:HGNC Symbol;Acc:HGNC:2333]
Coordinates
chr4:8599453-8601450:+
Coord C1 exon
chr4:8599453-8599485
Coord A exon
chr4:8600957-8601122
Coord C2 exon
chr4:8601123-8601450
Length
166 bp
Sequences
Splice sites
5' ss Seq
GCGGTACAG
5' ss Score
3.82
3' ss Seq
CCTCCTCTGGTCTCTCACAGGCT
3' ss Score
10.72
Exon sequences
Seq C1 exon
GTGAATGCCACAGGCCACCAGCTGCAGACAGCG
Seq A exon
GCTCTGATTCCTGCACAGTAGCTGTTGTCCTGGTCCTCCCCTGCCAGACCGTGGGTGCCCCTCCCTGCAGGCCCTGGCCCTGCGTGGGGTCCCCTACGTAAATGTCTGATGCGTGACGGTCAGGGCCACTGCAGGAGGGACTGACCTGCCGACCCTGCCTCCCCAG
Seq C2 exon
CCACCTGCGTGGACCTGCAGCTCAGGACCTGCAGCGATGCCGCCTACAACCACACCACCTTCCCCAACCTGCTTCAGCACCGGTCGTGGGAGGTGGTGGAGGCCAGCTCCGAGTACATCCTGCTGAGCGTTCTACACCAGCTCCTGGAAGGCCAGTGCAACCCGGACCTGCGGCTGCTGGGCTGTGCTGTGCTGGCCCCCCGGTGTGAGGGCGGCTGGGTGCGCAGACCCTGCCGGCACATCTGCGAGGGCCTGCGGGAGGTCTGCCAGCCCGCCTTCGACGCCATTGACATGGCCTGGCCCTACTTCCTTGACTGCCACCGCTACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109625-8-6,8-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0139217=Fz=WD(100=92.1)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCACCAGCTGCAGA
R:
GATGTGCCGGCAGGGTCT
Band lengths:
265-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains