HsaALTA1015372-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000109625 | CPZ
Description
carboxypeptidase Z [Source:HGNC Symbol;Acc:HGNC:2333]
Coordinates
chr4:8599453-8601450:+
Coord C1 exon
chr4:8599453-8599485
Coord A exon
NA
Coord C2 exon
chr4:8601123-8601450
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCGGTACAG
5' ss Score
3.82
3' ss Seq
TGCCGACCCTGCCTCCCCAGCCA
3' ss Score
6.26
Exon sequences
Seq C1 exon
GTGAATGCCACAGGCCACCAGCTGCAGACAGCG
Seq A exon
NA
Seq C2 exon
CCACCTGCGTGGACCTGCAGCTCAGGACCTGCAGCGATGCCGCCTACAACCACACCACCTTCCCCAACCTGCTTCAGCACCGGTCGTGGGAGGTGGTGGAGGCCAGCTCCGAGTACATCCTGCTGAGCGTTCTACACCAGCTCCTGGAAGGCCAGTGCAACCCGGACCTGCGGCTGCTGGGCTGTGCTGTGCTGGCCCCCCGGTGTGAGGGCGGCTGGGTGCGCAGACCCTGCCGGCACATCTGCGAGGGCCTGCGGGAGGTCTGCCAGCCCGCCTTCGACGCCATTGACATGGCCTGGCCCTACTTCCTTGACTGCCACCGCTACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109625-8-6,8-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0139217=Fz=WD(100=92.1)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCCACCAGCTGCAGA
R:
GATGTGCCGGCAGGGTCT
Band lengths:
265-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains