Special

BtaALTA0008073-2/2 @ bosTau6

Alternative 3'ss

Description
carboxypeptidase Z [Source:HGNC Symbol;Acc:HGNC:2333]
Coordinates
chr6:106631619-106633152:+
Coord C1 exon
chr6:106631619-106631651
Coord A exon
chr6:106632778-106632797
Coord C2 exon
chr6:106632798-106633152
Length
20 bp
Sequences
Splice sites
5' ss Seq
GCGGTACGT
5' ss Score
10.27
3' ss Seq
CGTCCCCCCCCCGCCCTCAGCCA
3' ss Score
8.42
Exon sequences
Seq C1 exon
GTGGATGCCCCAGGTCTGCAGCTGCAGACAGCG
Seq A exon
CCATGTGCGTGGACCTGCAG
Seq C2 exon
CTGCAGACCTGCAGTGACGTCACCTACAACCGGACGGCCTTCCCCACGCTGCTGCAACACCGGTCCCGGGAGGCCGTGGAGTCCAGCTCCGAGTACATCCTCCTGAGCGTGCTGCACCACCTCCTGGAGGGCCAGTGCAACCCCGACCTGCGCCTGCTGGGCTGCGCCGTGCTGGCCCCGCGCTGCGAGGGCGGCCGTGTGCGGAGACCCTGCCGCCACGTCTGCGGGGCGCTGCGCGAGGCCTGCCAGCCTGCCTTCGATGCCATCGACATGGCCTGGCCCTACTTCCTCGATTGCGGCCGCTACTTCTCGGGCCCGGAGGAAGGCTGCTATGACCCCCTGGAGAAGCTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014803-1-4,1-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact

Protein isoform when splice site is used (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
PF0139217=Fz=WD(100=92.1)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGCCCCAGGTCTGCAG
R:
CTGGACTCCACGGCCTCC
Band lengths:
117-137
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development