Special

DreALTA0008640-2/2 @ danRer10

Alternative 3'ss

Description
carboxypeptidase Z [Source:ZFIN;Acc:ZDB-GENE-090313-267]
Coordinates
chr1:40099767-40102332:+
Coord C1 exon
chr1:40099767-40099796
Coord A exon
chr1:40101958-40101962
Coord C2 exon
chr1:40101963-40102332
Length
5 bp
Sequences
Splice sites
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
3' ss Seq
CTTTTCTCTCTCATCCCTAGCGC
3' ss Score
11.34
Exon sequences
Seq C1 exon
GAAGATGCAGAACACCTGCAGAAGAGGGTC
Seq A exon
CGCAG
Seq C2 exon
TGCATAGAGATGGTTCTTGGCTACTGTCAGGATGTCCCATACACCCACACTACATTCCCCAACATTGTGGGCCACCGTACACGGCAGGATTTAGAGATGGGTGCAGAGTACCTGCTCCTGAGCGTGATCCACGGCCTGATGAAGGGAGAGTGTTCTCCAGACATCCGTATACTGGGATGCTCAGTTTTGGCTCCTCGCTGTGAAAACGGGAGGCTCATGAAGCCGTGCCGCAGCTCCTGTGAGATGCTGAAAAAGAGCTGCATTCATGCCTTCGAGGCCATTCAGATGGCATGGCCTTACTTTCTGGATTGCGACCGCTTCTTTGTTGGCAGCGAGGAGGGTTGTTATGATCCACTGTCAGAGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075521-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact

Protein isoform when splice site is used (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
PF0139217=Fz=WD(100=92.1)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACACCTGCAGAAGAGGGT
R:
GTACGGTGGCCCACAATGTTG
Band lengths:
102-107
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]