HsaALTA1017733-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000114739 | ACVR2B
Description
activin A receptor type 2B [Source:HGNC Symbol;Acc:HGNC:174]
Coordinates
chr3:38477861-38478292:+
Coord C1 exon
chr3:38477861-38477970
Coord A exon
chr3:38478141-38478164
Coord C2 exon
chr3:38478165-38478292
Length
24 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GGGCTCTGTGTGTCCCCCAGTCA
3' ss Score
7.43
Exon sequences
Seq C1 exon
GCAGGAGTGTGTGGCCACTGAGGAGAACCCCCAGGTGTACTTCTGCTGCTGTGAAGGCAACTTCTGCAACGAACGCTTCACTCATTTGCCAGAGGCTGGGGGCCCGGAAG
Seq A exon
TCACGTACGAGCCACCCCCGACAG
Seq C2 exon
CCCCCACCCTGCTCACGGTGCTGGCCTACTCACTGCTGCCCATCGGGGGCCTTTCCCTCATCGTCCTGCTGGCCTTTTGGATGTACCGGCATCGCAAGCCCCCCTACGGTCATGTGGACATCCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114739-9-5,9-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PD(33.0=78.9)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACGAACGCTTCACTCAT
R:
CAGCAGGACGATGAGGGAAAG
Band lengths:
117-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains