RnoALTA0002193-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000014477 | Acvr2b
Description
activin A receptor type 2B [Source:RGD Symbol;Acc:2028]
Coordinates
chr8:128113303-128113686:+
Coord C1 exon
chr8:128113303-128113412
Coord A exon
chr8:128113535-128113558
Coord C2 exon
chr8:128113559-128113686
Length
24 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GGGCTCCATGTGTCCCCCAGTCA
3' ss Score
5.35
Exon sequences
Seq C1 exon
GCAGGAGTGTGTGGCCACTGAGGAGAACCCCCAGGTGTATTTCTGCTGCTGTGAAGGCAATTTCTGCAACGAGCGCTTCACCCATTTGCCGGAGCCTGGGGGCCCAGAAG
Seq A exon
TCACGTACGAGCCACCCCCGACAG
Seq C2 exon
CCCCCACCCTGCTCACGGTGCTGGCCTATTCGCTGCTGCCCATTGGAGGCCTCTCTCTCATCGTCCTGCTGGCCTTCTGGATGTACCGACATCGAAAGCCTCCCTACGGCCACGTGGACATCCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014477-5-3,5-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PD(33.0=78.9)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGCTGCTGTGAAGGCAA
R:
CAATGGGCAGCAGCGAATAGG
Band lengths:
116-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]