HsaALTA1017786-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000114841 | DNAH1
Description
dynein axonemal heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr3:52349195-52350108:+
Coord C1 exon
chr3:52349195-52349420
Coord A exon
NA
Coord C2 exon
chr3:52349989-52350108
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
GCGCCTCCTCCCACTGCCAGATC
3' ss Score
8.84
Exon sequences
Seq C1 exon
AACCTACCAGACGCAGGGCCTGTTGGCCCAGGAGGTGCGGGAGGTAGTGCTCACCCACCTGCGGGAGAAGGAGATCCTGGACAGCTCGCTGCCCAGCAGCATCATCATTGGGCCTTTCTACATCAACACCGACAATGTCAAGCAGAGCCTGTCCAAGAAACGCAAGGCCCTGGCCACTTCCGTGCTGGACATCCTTGCCAAGAACCTGCATAAGGAGGTGGATAGC
Seq A exon
NA
Seq C2 exon
ATCTGCGAGGAGTTCCGCAGCATCAGCCGCAAGATCTATGAGAAGCCCAACAGCATTGAGGAGCTGGCTGAGCTGCGAGAGTGGATGAAGGGCATCCCGGAGAGGCTGGTGGGCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114841-24-29,24-28,24-27-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0240317=Seryl_tRNA_N=PU(39.6=52.6)
A:
NA
C2:
PF0240317=Seryl_tRNA_N=FE(38.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTAGTGCTCACCCACCT
R:
CCTCAATGCTGTTGGGCTTCT
Band lengths:
247-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains