HsaALTA1017786-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000114841 | DNAH1
Description
dynein axonemal heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr3:52349195-52350108:+
Coord C1 exon
chr3:52349195-52349420
Coord A exon
chr3:52349814-52349988
Coord C2 exon
chr3:52349989-52350108
Length
175 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
TACCCTTGCCCCACTGACAGTCC
3' ss Score
6.24
Exon sequences
Seq C1 exon
AACCTACCAGACGCAGGGCCTGTTGGCCCAGGAGGTGCGGGAGGTAGTGCTCACCCACCTGCGGGAGAAGGAGATCCTGGACAGCTCGCTGCCCAGCAGCATCATCATTGGGCCTTTCTACATCAACACCGACAATGTCAAGCAGAGCCTGTCCAAGAAACGCAAGGCCCTGGCCACTTCCGTGCTGGACATCCTTGCCAAGAACCTGCATAAGGAGGTGGATAGC
Seq A exon
TCCTCAGCAACCCAGGGAGCCCACCAGGAGCACCCCTCTTGGAAAGCGCCGCAGGATGTTGTGGTGGAGGGGACAGTTACCTGTCGGGAGATGCTGGAGACCAAGGAGGAAGAGCAGGTGAGGGAAGGCAAGGGAGCAGCATGCTGCCCTCCCCAGCGCCTCCTCCCACTGCCAG
Seq C2 exon
ATCTGCGAGGAGTTCCGCAGCATCAGCCGCAAGATCTATGAGAAGCCCAACAGCATTGAGGAGCTGGCTGAGCTGCGAGAGTGGATGAAGGGCATCCCGGAGAGGCTGGTGGGCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114841-24-29,24-28,24-27-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0240317=Seryl_tRNA_N=PU(39.6=52.6)
A:
NA
C2:
PF0240317=Seryl_tRNA_N=FE(38.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTAGTGCTCACCCACCT
R:
CCTCAATGCTGTTGGGCTTCT
Band lengths:
247-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains