HsaALTA1018747-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000116299 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr1:109197474-109198075:+
Coord C1 exon
chr1:109197474-109197654
Coord A exon
chr1:109197979-109197990
Coord C2 exon
chr1:109197991-109198075
Length
12 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TAGGAGCTCTAATTTGGCAGGGG
3' ss Score
0.71
Exon sequences
Seq C1 exon
GGTAGGAAAATGTCTGTGTGCACCGACAATGTCACTGACCTCCGGATTCCTGAGGGTGAGTCAGGGTTCTCCAAATCTATCACAGCCTACGTCTGCCAGGCAGTCATCATCCCCCCAGAGGTGACAGGCTACAAGGCCGGGGTTTCCTCACAGCCTGTCAGCCTTGCTGATCGACTTATTG
Seq A exon
GGGTGACAACAG
Seq C2 exon
ATATGACTCTGGATGGAATCACCTCCCCAGCTGAACTTTTCCACCTGGAGTCCTTGGGAATACCGGACGTGATCTTCTTTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116299-42-49,42-48-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTCCTCACAGCCTGTCAG
R:
TCCGGTATTCCCAAGGACTCC
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains