MmuALTA1031920-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000040412 | 5330417C22Rik
Description
RIKEN cDNA 5330417C22 gene [Source:MGI Symbol;Acc:MGI:1923930]
Coordinates
chr3:108463536-108464435:-
Coord C1 exon
chr3:108464255-108464435
Coord A exon
chr3:108463555-108463566
Coord C2 exon
chr3:108463536-108463554
Length
12 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TGGGAGCTCTGGTTTGACAGGAG
3' ss Score
3.17
Exon sequences
Seq C1 exon
GGGAAAAAAATGGCTGTGTGCACAGACAATGTCACTGACCTCCGGATCCCTGATGGTGAGGCCGGCTTCTCTAAGTCCGTCACAGCCTATGTCTGCCAGGTTGTCATCATCCCCTCTGAGGTGATGGGCTACAAGGCCGGGGTGTCCTCACAGCCCGTCAGCCTTGCTGACCGACTTGTTG
Seq A exon
GAGTGTCAACAG
Seq C2 exon
ACATGACCTTGGAAGGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040412-30-27,30-26-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types