HsaALTA1018750-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000116299 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr1:109200735-109203044:+
Coord C1 exon
chr1:109200735-109200900
Coord A exon
NA
Coord C2 exon
chr1:109202944-109203044
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TGTCACCATCTCTCTTTCAGAGG
3' ss Score
10.68
Exon sequences
Seq C1 exon
ACTAGAGTACAAGTACTCCAAGCTGGTGATGAATGCTACTCTCAAGGACTGTGACCTGCCAGCAGCTGACAGCTGCGCCATCATGGAAGGCGAGGATGTAGAGGACGACCTCATCTTTACCAGCAAGAAGTCACTCTTTGGGAAGATCAAATCATTTACCTCCAAG
Seq A exon
NA
Seq C2 exon
AGGACTCCTGATGGATTTGACTCAGTGCCGCTGAAGACATCCTCAGGAGGCCTAGACATGGACCTGTGAGAGGCACTGCCTGCCTCACCTGCCTCCTCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116299-50-61,50-60,50-59-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGGCGAGGATGTAGAGG
R:
GCGGCACTGAGTCAAATCCAT
Band lengths:
114-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains