HsaALTA1021225-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000122966 | CIT
Description
citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
Coordinates
chr12:119734164-119735357:-
Coord C1 exon
chr12:119735160-119735357
Coord A exon
NA
Coord C2 exon
chr12:119734164-119734357
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TCAGTGCTACTGATTTGCAGACG
3' ss Score
5.56
Exon sequences
Seq C1 exon
GTAATCACAGACCTGGAGGAGCAGCTAAACCAGCTGACCGAGGACAACGCTGAACTCAACAACCAAAACTTCTACTTGTCCAAACAACTCGATGAGGCTTCTGGCGCCAACGACGAGATTGTACAACTGCGAAGTGAAGTGGACCATCTCCGCCGGGAGATCACGGAACGAGAGATGCAGCTTACCAGCCAGAAGCAA
Seq A exon
NA
Seq C2 exon
ACGATGGAGGCTCTGAAGACCACGTGCACCATGCTGGAGGAACAGGTCATGGATTTGGAGGCCCTAAACGATGAGCTGCTAGAAAAAGAGCGGCAGTGGGAGGCCTGGAGGAGCGTCCTGGGTGATGAGAAATCCCAGTTTGAGTGTCGGGTTCGAGAGCTGCAGAGAATGCTGGACACCGAGAAACAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122966-59-58,59-57-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.442 A=NA C2=0.160
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=PU(13.5=52.8),PF079267=TPR_MLP1_2=PU(11.9=27.8)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(40.5=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCGAAGTGAAGTGGACC
R:
GGCCTCCAAATCCATGACCTG
Band lengths:
137-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains