Special

HsaALTA1021532-1/3 @ hg38

Alternative 3'ss

Gene
Description
RAP2C, member of RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:21165]
Coordinates
chrX:132216996-132217367:-
Coord C1 exon
chrX:132217278-132217367
Coord A exon
NA
Coord C2 exon
chrX:132216996-132217141
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGAAGATTTCTACCGCAAAGAGA
3' ss Score
-1.98
Exon sequences
Seq C1 exon
TTCGCAGATTTCCGCCCACCTTCCGCCTCGTCTAGCCGCGCCACAGCTAGCGGGGTGATCTTTCCCCCCCTCTGGTAGGAGTTGGTGAAG
Seq A exon
NA
Seq C2 exon
AGATCGAAGTGGACTCTTCCCCCTCCGTGCTGGAAATTCTGGACACCGCAGGAACTGAGCAGTTTGCCTCCATGAGAGATCTCTACATCAAAAACGGCCAAGGTTTCATCCTGGTTTATAGCCTGGTTAATCAACAGTCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123728-8-10,8-9,8-8-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact

5' UTR

No structure available
Features
Disorder rate (disopred):
  C1=NA A=NA C2=0.000
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
PF0007117=Ras=PU(24.0=96.0)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTAGCGGGGTGATCTTTC
R:
GTTCCTGCGGTGTCCAGAATT
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains