HsaALTA1021532-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000123728 | RAP2C
Description
RAP2C, member of RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:21165]
Coordinates
chrX:132216996-132217367:-
Coord C1 exon
chrX:132217278-132217367
Coord A exon
chrX:132217142-132217156
Coord C2 exon
chrX:132216996-132217141
Length
15 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATATGACCCCACCATTGAAGATT
3' ss Score
3.06
Exon sequences
Seq C1 exon
TTCGCAGATTTCCGCCCACCTTCCGCCTCGTCTAGCCGCGCCACAGCTAGCGGGGTGATCTTTCCCCCCCTCTGGTAGGAGTTGGTGAAG
Seq A exon
ATTTCTACCGCAAAG
Seq C2 exon
AGATCGAAGTGGACTCTTCCCCCTCCGTGCTGGAAATTCTGGACACCGCAGGAACTGAGCAGTTTGCCTCCATGAGAGATCTCTACATCAAAAACGGCCAAGGTTTCATCCTGGTTTATAGCCTGGTTAATCAACAGTCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123728-8-10,8-9,8-8-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0007117=Ras=PU(24.0=96.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTAGCGGGGTGATCTTTC
R:
GTTCCTGCGGTGTCCAGAATT
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains